Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnf213Ring finger protein 213a. (5119 aa)    
Predicted Functional Partners:
nudcd1
Uncharacterized protein.
    
   0.721
ENSTRUP00000067043
Protein mono-ADP-ribosyltransferase PARP14-like isoform X1.
   
 0.656
LOC101070078
Otoferlin a.
      
 0.512
fer1l6
Fer-1-like protein 6 isoform X1.
      
 0.512
LOC101071687
USP domain-containing protein; Belongs to the peptidase C19 family.
   
 0.445
LOC101078526
Envoplakin b.
   
 0.426
ppl
Periplakin.
   
 0.426
ENSTRUP00000054856
CASP2 and RIPK1 domain containing adaptor with death domain.
    
 0.414
LOC101061845
NME/NM23 family member 8; Belongs to the NDK family.
   
 0.401
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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