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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101074598Zgc:154046; Belongs to the carnitine/choline acetyltransferase family. (666 aa)    
Predicted Functional Partners:
LOC101072399
Carnitine O-acetyltransferase b.
  
  
 
0.902
rpp14
Ribonuclease P/MRP 14 subunit.
   
 0.779
scp2
Sterol carrier protein 2a; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.761
hsd17b4
Hydroxysteroid (17-beta) dehydrogenase 4.
   
 0.717
hsdl2
Hydroxysteroid dehydrogenase like 2.
   
 0.712
LOC101075777
Malate synthase-like.
   
  
 0.696
acox1
Acyl-CoA_dh_M domain-containing protein.
   
 0.693
ech1
Enoyl CoA hydratase 1, peroxisomal.
   
 0.627
SLC18A3
MFS domain-containing protein.
 
 
  
 0.610
LOC105416362
Solute carrier family 18 member 3a.
 
 
  
 0.596
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.