LOC101064265 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101064265

Cyclin-dependent kinase 17; Belongs to the protein kinase superfamily. (584 aa)

Predicted Functional Partners:

plk3

0.778

cdc6

0.763

cdc25b

0.762

mcm3

0.751

orc2

0.733

cdc7

0.726

ccna2

0.716

ccna1

0.716

cdc27

0.713

cdc23

0.712

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101064265	ccna1	ENSTRUP00000024740	ENSTRUP00000059682	Cyclin-dependent kinase 17; Belongs to the protein kinase superfamily.	Cyclin-A1 isoform X1.	0.716
LOC101064265	ccna2	ENSTRUP00000024740	ENSTRUP00000051214	Cyclin-dependent kinase 17; Belongs to the protein kinase superfamily.	Cyclin A2; Belongs to the cyclin family.	0.716
LOC101064265	cdc23	ENSTRUP00000024740	ENSTRUP00000043172	Cyclin-dependent kinase 17; Belongs to the protein kinase superfamily.	CDC23 (cell division cycle 23, yeast, homolog).	0.712
LOC101064265	cdc25b	ENSTRUP00000024740	ENSTRUP00000086013	Cyclin-dependent kinase 17; Belongs to the protein kinase superfamily.	Cell division cycle 25B.	0.762
LOC101064265	cdc27	ENSTRUP00000024740	ENSTRUP00000001702	Cyclin-dependent kinase 17; Belongs to the protein kinase superfamily.	Cell division cycle 27.	0.713
LOC101064265	cdc6	ENSTRUP00000024740	ENSTRUP00000085004	Cyclin-dependent kinase 17; Belongs to the protein kinase superfamily.	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.	0.763
LOC101064265	cdc7	ENSTRUP00000024740	ENSTRUP00000007900	Cyclin-dependent kinase 17; Belongs to the protein kinase superfamily.	Cell division cycle 7 homolog (S. cerevisiae).	0.726
LOC101064265	mcm3	ENSTRUP00000024740	ENSTRUP00000059130	Cyclin-dependent kinase 17; Belongs to the protein kinase superfamily.	DNA helicase; Belongs to the MCM family.	0.751
LOC101064265	orc2	ENSTRUP00000024740	ENSTRUP00000065226	Cyclin-dependent kinase 17; Belongs to the protein kinase superfamily.	Origin recognition complex, subunit 2.	0.733
LOC101064265	plk3	ENSTRUP00000024740	ENSTRUP00000003764	Cyclin-dependent kinase 17; Belongs to the protein kinase superfamily.	Serine/threonine-protein kinase PLK.	0.778
ccna1	LOC101064265	ENSTRUP00000059682	ENSTRUP00000024740	Cyclin-A1 isoform X1.	Cyclin-dependent kinase 17; Belongs to the protein kinase superfamily.	0.716
ccna1	ccna2	ENSTRUP00000059682	ENSTRUP00000051214	Cyclin-A1 isoform X1.	Cyclin A2; Belongs to the cyclin family.	0.914
ccna1	cdc23	ENSTRUP00000059682	ENSTRUP00000043172	Cyclin-A1 isoform X1.	CDC23 (cell division cycle 23, yeast, homolog).	0.665
ccna1	cdc25b	ENSTRUP00000059682	ENSTRUP00000086013	Cyclin-A1 isoform X1.	Cell division cycle 25B.	0.846
ccna1	cdc27	ENSTRUP00000059682	ENSTRUP00000001702	Cyclin-A1 isoform X1.	Cell division cycle 27.	0.825
ccna1	cdc6	ENSTRUP00000059682	ENSTRUP00000085004	Cyclin-A1 isoform X1.	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.	0.996
ccna1	cdc7	ENSTRUP00000059682	ENSTRUP00000007900	Cyclin-A1 isoform X1.	Cell division cycle 7 homolog (S. cerevisiae).	0.552
ccna1	mcm3	ENSTRUP00000059682	ENSTRUP00000059130	Cyclin-A1 isoform X1.	DNA helicase; Belongs to the MCM family.	0.844
ccna1	orc2	ENSTRUP00000059682	ENSTRUP00000065226	Cyclin-A1 isoform X1.	Origin recognition complex, subunit 2.	0.856
ccna1	plk3	ENSTRUP00000059682	ENSTRUP00000003764	Cyclin-A1 isoform X1.	Serine/threonine-protein kinase PLK.	0.900