STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101062602FRA10A associated CGG repeat 1. (325 aa)    
Predicted Functional Partners:
ess2
Ess-2 splicing factor homolog.
    
 
 0.950
cwc27
CWC27 spliceosome associated cyclophilin.
   
 
 0.939
cherp
Calcium homeostasis endoplasmic reticulum protein.
    
 
 0.906
ik
IK cytokine.
   
   0.897
sf3b2
Splicing factor 3b, subunit 2.
    
 
 0.897
leng1
Leukocyte receptor cluster (LRC) member 1.
    
   0.875
pithd1
PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1.
      
 0.770
thoc1
THO complex 1.
    
 
 0.720
spryd7
SPRY domain containing 7b.
      
 0.711
ubac1
UBA domain containing 1.
      
 0.710
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.