STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mymkMyomaker, myoblast fusion factor. (226 aa)    
Predicted Functional Partners:
myog
Myogenin.
   
  
 0.884
LOC101077779
Uncharacterized protein.
      
 0.824
jam2
Junctional adhesion molecule 2a.
      
 0.631
myf6
Myogenic factor 6; Involved in muscle differentiation (myogenic factor). Induces fibroblasts to differentiate into myoblasts. Probable sequence specific DNA-binding protein (By similarity).
   
  
 0.596
yipf5
Protein YIPF.
   
  
 0.533
aff4
AF4/FMR2 family, member 4.
      
 0.518
IQCA1L
ATPase_AAA_core domain-containing protein.
      
 0.513
dcst1
E3 ubiquitin-protein ligase DCST1.
      
 0.513
phf24
PHD finger protein 24.
      
 0.487
myf5
Myogenic factor.
   
  
 0.454
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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