Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam53bFamily with sequence similarity 53 member B. (411 aa)    
Predicted Functional Partners:
DCAF7
DDB1 and CUL4 associated factor 7.
    
 
 0.628
cyfip2
Cytoplasmic FMR1 interacting protein 2.
      
 0.616
YWHAE
14_3_3 domain-containing protein; Belongs to the 14-3-3 family.
    
 
 0.533
LOC101077875
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.
    
 
 0.533
LOC101076314
Cornichon family AMPA receptor auxiliary protein 3.
      
 0.513
LOC101074874
Cornichon family AMPA receptor auxiliary protein 2.
      
 0.513
LOC101070521
Dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A, b.
    
 
 0.484
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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