STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSTRUP00000024880Remodeling and spacing factor 1b, tandem duplicate 1. (1855 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.972
rsf1
PHD-type domain-containing protein.
     
 
0.900
bptf
Bromodomain PHD finger transcription factor.
   
 
 0.780
LOC101078073
Bromodomain PHD finger transcription factor.
   
 
0.780
pole3
Polymerase (DNA directed), epsilon 3 (p17 subunit).
     
 0.705
LOC101067848
Chromatin accessibility complex subunit 1.
     
 0.704
H2T6G5_TAKRU
PHD-type domain-containing protein.
   
 0.677
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
   
0.647
virma
Vir like m6A methyltransferase associated.
   
   0.633
LOC101075377
Bromo domain-containing protein.
    
 0.630
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.