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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSTRUP00000024880Remodeling and spacing factor 1b, tandem duplicate 1. (1855 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.874
bptf
Bromodomain PHD finger transcription factor.
   
 
 0.663
LOC101078073
Bromodomain PHD finger transcription factor.
   
 
0.663
cenpi
Centromere protein I.
  
 
 0.596
H2T6G5_TAKRU
PHD-type domain-containing protein.
   
  0.554
cenpt
Uncharacterized protein.
    
 0.534
wdr18
WD repeat domain 18.
   
 0.490
cenpn
Centromere protein N.
    
 0.485
LOC101062834
Nipped-B protein.
   
   0.474
LOC101076906
Nipped-B protein.
   
   0.474
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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