ube3c protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ube3c

Ubiquitin protein ligase E3C. (1150 aa)

Predicted Functional Partners:

psmd14

0.944

psmd2

0.935

LOC101070351

0.886

LOC105417201

0.868

LOC101067241

0.868

trip12

0.862

ADRM1

0.818

psmd6

0.790

LOC101062380

0.781

usp14

0.766

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADRM1	LOC101062380	ENSTRUP00000014793	ENSTRUP00000083041	Adhesion regulating molecule 1.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.996
ADRM1	LOC101067241	ENSTRUP00000014793	ENSTRUP00000084184	Adhesion regulating molecule 1.	Proteasome 26S subunit, non-ATPase 4b.	0.994
ADRM1	LOC105417201	ENSTRUP00000014793	ENSTRUP00000080728	Adhesion regulating molecule 1.	Proteasome 26S subunit, non-ATPase 4a.	0.994
ADRM1	psmd14	ENSTRUP00000014793	ENSTRUP00000043942	Adhesion regulating molecule 1.	Proteasome 26S subunit, non-ATPase 14.	0.993
ADRM1	psmd2	ENSTRUP00000014793	ENSTRUP00000053851	Adhesion regulating molecule 1.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.996
ADRM1	psmd6	ENSTRUP00000014793	ENSTRUP00000023419	Adhesion regulating molecule 1.	Proteasome 26S subunit, non-ATPase 6.	0.997
ADRM1	ube3c	ENSTRUP00000014793	ENSTRUP00000024888	Adhesion regulating molecule 1.	Ubiquitin protein ligase E3C.	0.818
ADRM1	usp14	ENSTRUP00000014793	ENSTRUP00000054871	Adhesion regulating molecule 1.	Ubiquitin carboxyl-terminal hydrolase.	0.987
LOC101062380	ADRM1	ENSTRUP00000083041	ENSTRUP00000014793	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	Adhesion regulating molecule 1.	0.996
LOC101062380	LOC101067241	ENSTRUP00000083041	ENSTRUP00000084184	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	Proteasome 26S subunit, non-ATPase 4b.	0.992
LOC101062380	LOC101070351	ENSTRUP00000083041	ENSTRUP00000048748	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.424
LOC101062380	LOC105417201	ENSTRUP00000083041	ENSTRUP00000080728	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	Proteasome 26S subunit, non-ATPase 4a.	0.992
LOC101062380	psmd14	ENSTRUP00000083041	ENSTRUP00000043942	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	Proteasome 26S subunit, non-ATPase 14.	0.999
LOC101062380	psmd2	ENSTRUP00000083041	ENSTRUP00000053851	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.998
LOC101062380	psmd6	ENSTRUP00000083041	ENSTRUP00000023419	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	Proteasome 26S subunit, non-ATPase 6.	0.999
LOC101062380	trip12	ENSTRUP00000083041	ENSTRUP00000016171	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	Thyroid hormone receptor interactor 12.	0.950
LOC101062380	ube3c	ENSTRUP00000083041	ENSTRUP00000024888	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	Ubiquitin protein ligase E3C.	0.781
LOC101062380	usp14	ENSTRUP00000083041	ENSTRUP00000054871	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	Ubiquitin carboxyl-terminal hydrolase.	0.997
LOC101067241	ADRM1	ENSTRUP00000084184	ENSTRUP00000014793	Proteasome 26S subunit, non-ATPase 4b.	Adhesion regulating molecule 1.	0.994
LOC101067241	LOC101062380	ENSTRUP00000084184	ENSTRUP00000083041	Proteasome 26S subunit, non-ATPase 4b.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.992