Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101071790Filamin A interacting protein 1a. (1214 aa)    
Predicted Functional Partners:
ENSTRUP00000053831
AT hook, DNA binding motif, containing 1.
      
 0.592
pdcd10
Programmed cell death 10b.
    
   0.547
jarid2
Jumonji, AT rich interactive domain 2b.
      
 0.513
LOC101061845
NME/NM23 family member 8; Belongs to the NDK family.
   
 0.513
brca2
BRCA2 DNA repair associated.
      
 0.477
wdr90
WD repeat domain 90.
   
 0.453
ZNF521
Zinc finger protein 521.
    
 0.449
LOC101078365
MOB family member 4, phocein.
    
   0.423
plk3
Serine/threonine-protein kinase PLK.
   
 0.421
plk4
Polo-like kinase 4 (Drosophila).
   
 0.421
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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