Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101067251Si:dkeyp-19e1.3. (820 aa)    
Predicted Functional Partners:
LOC101070926
Uncharacterized protein.
    
 0.811
ENSTRUP00000061520
Ras-related protein Rab-19-like isoform X1.
    
 0.811
RAB19
RAB19, member RAS oncogene family.
    
 0.811
LOC101073601
Uncharacterized protein.
   
 0.536
LOC101069905
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
 0.536
LOC101066679
Uncharacterized protein.
   
  0.517
fam214b
Family with sequence similarity 214 member B.
      
 0.485
rhno1
Si:ch73-352p4.5.
      
 0.477
RAB17
RAB17, member RAS oncogene family.
    
 0.476
rab5c
RAB5C, member RAS oncogene family.
    
 0.476
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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