STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101067251Si:dkeyp-19e1.3. (820 aa)    
Predicted Functional Partners:
LOC101073601
Uncharacterized protein.
   
 0.619
LOC101069905
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
 0.619
LOC101066679
Uncharacterized protein.
   
  0.614
LOC101070926
Uncharacterized protein.
    
 0.574
ENSTRUP00000061520
Ras-related protein Rab-19-like isoform X1.
    
 0.574
RAB19
RAB19, member RAS oncogene family.
    
 0.574
RAB17
RAB17, member RAS oncogene family.
    
 0.512
rab5c
RAB5C, member RAS oncogene family.
    
 0.512
LOC101069188
Uncharacterized protein.
    
 0.512
LOC101071138
RAB5A, member RAS oncogene family, a.
    
 0.512
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.