STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101072911Sidekick cell adhesion molecule 2a. (2228 aa)    
Predicted Functional Partners:
LOC101068243
Zgc:112083.
      
 0.695
ENSTRUP00000080163
DENN/MADD domain containing 6B.
      
 0.582
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.548
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.527
LOC101080202
Info solute carrier family 35 member F2, like.
      
 0.514
bicc1
BicC family RNA binding protein 1a.
      
 0.514
LOC101077870
Bicaudal C homolog 2.
      
 0.514
LOC101065535
Solute carrier family 35 member F2.
      
 0.514
ZNF516
Zinc finger protein 516.
     
 0.509
LOC101074354
Zinc finger protein 516-like isoform X1.
     
 0.509
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.