STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
itga10Integrin, alpha 10; Belongs to the integrin alpha chain family. (1073 aa)    
Predicted Functional Partners:
LOC101067303
Integrin beta; Belongs to the integrin beta chain family.
   
 0.920
LOC101061453
Integrin beta; Belongs to the integrin beta chain family.
   
 0.920
LOC101075584
Integrin beta; Belongs to the integrin beta chain family.
   
 0.865
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.865
Tln1
Talin 1.
    
 0.856
tln2
Talin 2b.
    
 0.856
LOC101068097
Tenascin C.
    
 0.850
itgbl1
Integrin, beta-like 1.
   
 0.849
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.846
Tnc
Fibronectin type-III domain-containing protein.
    
 0.817
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.