pex5 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pex5

Peroxisomal biogenesis factor 5. (641 aa)

Predicted Functional Partners:

pex14

0.989

pex7

0.989

hacl1

0.960

scp2

0.914

pex12

0.912

pex5l

0.906

pex10

0.881

eci2

0.869

pex6

0.854

LOC101079883

0.851

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101079883	eci2	ENSTRUP00000064055	ENSTRUP00000044766	Peroxisomal biogenesis factor 13.	Enoyl-CoA delta isomerase 2.	0.687
LOC101079883	hacl1	ENSTRUP00000064055	ENSTRUP00000051323	Peroxisomal biogenesis factor 13.	2-hydroxyacyl-CoA lyase 1; Belongs to the TPP enzyme family.	0.642
LOC101079883	pex10	ENSTRUP00000064055	ENSTRUP00000076586	Peroxisomal biogenesis factor 13.	Peroxisomal biogenesis factor 10.	0.960
LOC101079883	pex12	ENSTRUP00000064055	ENSTRUP00000065619	Peroxisomal biogenesis factor 13.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.983
LOC101079883	pex14	ENSTRUP00000064055	ENSTRUP00000050402	Peroxisomal biogenesis factor 13.	Peroxisomal biogenesis factor 14.	0.997
LOC101079883	pex5	ENSTRUP00000064055	ENSTRUP00000025070	Peroxisomal biogenesis factor 13.	Peroxisomal biogenesis factor 5.	0.851
LOC101079883	pex5l	ENSTRUP00000064055	ENSTRUP00000073109	Peroxisomal biogenesis factor 13.	Peroxisomal biogenesis factor 5-like a.	0.851
LOC101079883	pex6	ENSTRUP00000064055	ENSTRUP00000035255	Peroxisomal biogenesis factor 13.	Peroxisomal biogenesis factor 6.	0.937
LOC101079883	pex7	ENSTRUP00000064055	ENSTRUP00000073055	Peroxisomal biogenesis factor 13.	Peroxisomal biogenesis factor 7.	0.960
LOC101079883	scp2	ENSTRUP00000064055	ENSTRUP00000032400	Peroxisomal biogenesis factor 13.	Sterol carrier protein 2a; Belongs to the thiolase-like superfamily. Thiolase family.	0.716
eci2	LOC101079883	ENSTRUP00000044766	ENSTRUP00000064055	Enoyl-CoA delta isomerase 2.	Peroxisomal biogenesis factor 13.	0.687
eci2	hacl1	ENSTRUP00000044766	ENSTRUP00000051323	Enoyl-CoA delta isomerase 2.	2-hydroxyacyl-CoA lyase 1; Belongs to the TPP enzyme family.	0.727
eci2	pex10	ENSTRUP00000044766	ENSTRUP00000076586	Enoyl-CoA delta isomerase 2.	Peroxisomal biogenesis factor 10.	0.771
eci2	pex12	ENSTRUP00000044766	ENSTRUP00000065619	Enoyl-CoA delta isomerase 2.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.851
eci2	pex14	ENSTRUP00000044766	ENSTRUP00000050402	Enoyl-CoA delta isomerase 2.	Peroxisomal biogenesis factor 14.	0.809
eci2	pex5	ENSTRUP00000044766	ENSTRUP00000025070	Enoyl-CoA delta isomerase 2.	Peroxisomal biogenesis factor 5.	0.869
eci2	pex5l	ENSTRUP00000044766	ENSTRUP00000073109	Enoyl-CoA delta isomerase 2.	Peroxisomal biogenesis factor 5-like a.	0.869
eci2	pex6	ENSTRUP00000044766	ENSTRUP00000035255	Enoyl-CoA delta isomerase 2.	Peroxisomal biogenesis factor 6.	0.448
eci2	pex7	ENSTRUP00000044766	ENSTRUP00000073055	Enoyl-CoA delta isomerase 2.	Peroxisomal biogenesis factor 7.	0.453
eci2	scp2	ENSTRUP00000044766	ENSTRUP00000032400	Enoyl-CoA delta isomerase 2.	Sterol carrier protein 2a; Belongs to the thiolase-like superfamily. Thiolase family.	0.994