Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rtn1Reticulon. (735 aa)    
Predicted Functional Partners:
Omg
Oligodendrocyte myelin glycoprotein a.
    
 0.674
snx15
Sorting nexin 15.
    
   0.671
LOC101075808
Receptor expression-enhancing protein.
    
 
 0.654
atl1
Atlastin GTPase 1.
    
 
 0.651
atl3
Atlastin 3.
    
 
 0.641
LOC101073058
Atlastin GTPase 2.
    
 
 0.626
LOC101067226
Receptor expression-enhancing protein.
    
 
 0.583
lingo2
Leucine rich repeat and Ig domain containing 2a.
   
 0.579
lingo1
Leucine rich repeat and Ig domain containing 1a.
   
 0.579
LOC101071596
Leucine rich repeat and Ig domain containing 1b.
   
 0.579
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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