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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd10Ankyrin repeat domain 10b. (347 aa)    
Predicted Functional Partners:
ten1
TEN1 subunit of CST complex.
      
 0.673
UBE3A
Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.
    
 
 0.609
LOC101063160
Ubiquitin protein ligase E3A.
    
 
 0.596
asb14
Ankyrin repeat and SOCS box containing 14b.
  
   
 0.517
nfkbia
Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.
  
   
 0.508
nfkbie
Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon.
  
   
 0.494
H2T0Q0_TAKRU
ANK_REP_REGION domain-containing protein.
  
  
  0.494
asz1
Uncharacterized protein.
  
     0.486
ddx55
RNA helicase.
   
 0.473
ppp1r16b
Protein phosphatase 1, regulatory subunit 16B.
  
  
  0.467
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.