Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115252571GTF2I repeat domain containing 1. (996 aa)    
Predicted Functional Partners:
HDAC3
Histone deacetylase 3.
    
 
 0.732
zmym2
Zinc finger, MYM-type 2.
    
 
 0.667
wdr53
WD repeat domain 53.
      
 0.637
nsun5
NOP2/Sun RNA methyltransferase 5; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
      
 0.612
bcl7b
BAF chromatin remodeling complex subunit BCL7B b.
      
 0.593
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
      
 0.534
cux1
Cut-like homeobox 1b.
      
 0.529
fkbp6
Peptidylprolyl isomerase.
      
 0.514
rfc2
Replication factor C (activator 1) 2.
      
 0.513
LOC101063967
Si:ch211-284f22.3.
      
 0.510
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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