Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pusl1tRNA pseudouridine synthase. (297 aa)    
Predicted Functional Partners:
tmem244
Transmembrane protein 244.
      
 0.868
trub2
TruB pseudouridine (psi) synthase family member 2.
   
 0.865
tmem141
Transmembrane protein 141.
      
 0.849
rsrc1
Arginine/serine-rich coiled-coil 1.
   
 
 0.818
Trub1
Uncharacterized protein.
   
 0.814
pus7l
Pseudouridine synthase 7 like.
   
 
 0.799
LOC101069088
RNA pseudouridine synthase D4.
  
  
 0.730
LOC101073954
Dyskeratosis congenita 1, dyskerin.
   
 0.728
ints11
Integrator complex subunit 11.
  
  
 0.720
MTERF4
Mitochondrial transcription termination factor 4.
      
 0.716
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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