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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101072938Uncharacterized protein. (323 aa)    
Predicted Functional Partners:
snapc3
Small nuclear RNA activating complex, polypeptide 3.
   
 0.971
snapc5
Small nuclear RNA activating complex, polypeptide 5.
    
 0.965
gtf2b
General transcription factor IIB.
    
 0.871
trf3
TATA box-binding protein-like protein 2; TATA box-binding transcription factor. Members of the TBP family are differentially required to regulate transcription and development during early embryogenesis (By similarity).
   
 0.797
tbp
TATA box binding protein.
   
 0.794
ENSTRUP00000058542
General transcription factor IIA, 2.
    
  0.786
gtf2a1
General transcription factor IIA, 1.
    
  0.771
LOC101078372
General transcription factor IIA, 1-like.
    
  0.699
bdp1
SANT domain-containing protein.
    
 0.670
LOC101075029
TATA-box binding protein like 1.
   
 0.669
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.