ENSTRUP00000025517 protein (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSTRUP00000025517

annotation not available (263 aa)

Predicted Functional Partners:

dhrs3

0.495

sdr16c5

0.495

rdh10

0.495

LOC101068771

0.495

H2SJZ6_TAKRU

0.495

etnppl

0.445

mrgbp

0.417

ino80

0.417

vps72

0.405

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000025517	H2SJZ6_TAKRU	ENSTRUP00000025517	ENSTRUP00000074049	annotation not available	Uncharacterized protein.	0.495
ENSTRUP00000025517	LOC101068771	ENSTRUP00000025517	ENSTRUP00000066365	annotation not available	Retinol dehydrogenase 20; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.495
ENSTRUP00000025517	dhrs3	ENSTRUP00000025517	ENSTRUP00000016199	annotation not available	Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.495
ENSTRUP00000025517	etnppl	ENSTRUP00000025517	ENSTRUP00000079567	annotation not available	Ethanolamine-phosphate phospho-lyase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.445
ENSTRUP00000025517	ino80	ENSTRUP00000025517	ENSTRUP00000033050	annotation not available	INO80 complex ATPase subunit.	0.417
ENSTRUP00000025517	mrgbp	ENSTRUP00000025517	ENSTRUP00000015147	annotation not available	MRG/MORF4L binding protein.	0.417
ENSTRUP00000025517	rdh10	ENSTRUP00000025517	ENSTRUP00000059610	annotation not available	Retinol dehydrogenase 10a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.495
ENSTRUP00000025517	sdr16c5	ENSTRUP00000025517	ENSTRUP00000025871	annotation not available	Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.495
ENSTRUP00000025517	vps72	ENSTRUP00000025517	ENSTRUP00000014805	annotation not available	Vacuolar protein sorting 72 homolog a.	0.405
H2SJZ6_TAKRU	ENSTRUP00000025517	ENSTRUP00000074049	ENSTRUP00000025517	Uncharacterized protein.	annotation not available	0.495
LOC101068771	ENSTRUP00000025517	ENSTRUP00000066365	ENSTRUP00000025517	Retinol dehydrogenase 20; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	annotation not available	0.495
dhrs3	ENSTRUP00000025517	ENSTRUP00000016199	ENSTRUP00000025517	Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	annotation not available	0.495
etnppl	ENSTRUP00000025517	ENSTRUP00000079567	ENSTRUP00000025517	Ethanolamine-phosphate phospho-lyase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	annotation not available	0.445
etnppl	ino80	ENSTRUP00000079567	ENSTRUP00000033050	Ethanolamine-phosphate phospho-lyase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	INO80 complex ATPase subunit.	0.795
etnppl	mrgbp	ENSTRUP00000079567	ENSTRUP00000015147	Ethanolamine-phosphate phospho-lyase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	MRG/MORF4L binding protein.	0.869
etnppl	vps72	ENSTRUP00000079567	ENSTRUP00000014805	Ethanolamine-phosphate phospho-lyase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Vacuolar protein sorting 72 homolog a.	0.582
ino80	ENSTRUP00000025517	ENSTRUP00000033050	ENSTRUP00000025517	INO80 complex ATPase subunit.	annotation not available	0.417
ino80	etnppl	ENSTRUP00000033050	ENSTRUP00000079567	INO80 complex ATPase subunit.	Ethanolamine-phosphate phospho-lyase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.795
ino80	mrgbp	ENSTRUP00000033050	ENSTRUP00000015147	INO80 complex ATPase subunit.	MRG/MORF4L binding protein.	0.901
ino80	vps72	ENSTRUP00000033050	ENSTRUP00000014805	INO80 complex ATPase subunit.	Vacuolar protein sorting 72 homolog a.	0.818