STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lamp2Lysosomal-associated membrane protein 2. (406 aa)    
Predicted Functional Partners:
LOC101073797
Lysosomal associated membrane protein 1b.
  
0.982
lamp1
Lysosomal associated membrane protein 1a.
  
0.982
cd63
Tetraspanin.
   
 0.930
gorasp1
Golgi reassembly stacking protein 1a.
    
 0.903
LOC101074307
Golgi reassembly stacking protein 2.
    
 0.901
fastkd2
FAST kinase domains 2.
      
 0.707
LOC101065606
Transcription factor EB.
   
 
 0.627
eea1
Early endosome antigen 1.
      
 0.611
mtor
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 
 0.609
LOC101075804
Vertebrate ancient long opsin b.
      
 0.571
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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