Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
scpp2Uncharacterized protein. (219 aa)    
Predicted Functional Partners:
scpp5
SCPP5.
      
 0.965
scpp1
SCPP1.
      
 0.896
scpp4
Uncharacterized protein.
      
 0.701
fgfr1
Fibroblast growth factor receptor.
      
 0.698
scpp3c
Uncharacterized protein.
      
 0.590
scpp3b
SCPP3B.
      
 0.588
sparc
SPARC.
      
 0.550
mgp
Gla domain-containing protein.
      
 0.541
LOC445896
Uncharacterized protein.
      
 0.516
LOC105419491
Gla domain-containing protein.
      
 0.464
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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