Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115247179Uncharacterized protein. (584 aa)    
Predicted Functional Partners:
hnrnpc
RRM domain-containing protein.
   
 0.843
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.835
LOC101076991
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.835
Raver2
Ribonucleoprotein PTB-binding 2 isoform X1.
   
 0.817
H2RPD9_TAKRU
RRM domain-containing protein.
   
 0.795
ENSTRUP00000075247
annotation not available
   
 0.795
hnrnpl
Heterogeneous nuclear ribonucleoprotein L.
   
 0.795
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.748
LOC101076059
Uncharacterized protein.
   
 0.745
LOC101066421
Heterogeneous nuclear ribonucleoprotein D.
   
 0.745
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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