STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101071342Si:dkey-46g23.1. (1955 aa)    
Predicted Functional Partners:
LOC101078091
Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily.
    
 0.696
LOC101067386
Argonaute RISC catalytic component 3a; Belongs to the argonaute family.
    
 0.696
ago3
Uncharacterized protein; Belongs to the argonaute family.
    
 0.696
LOC101062906
Argonaute RISC component 1; Belongs to the argonaute family.
    
 0.696
edc3
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
      
 0.605
gigyf1
Uncharacterized protein.
    
 
 0.576
ENSTRUP00000011752
annotation not available
      
 0.553
LOC101075419
Cleavage and polyadenylation specific factor 3.
   
 
 0.512
LOC105417758
Decapping mRNA 1B.
    
 
 0.511
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 
 0.500
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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