cirbp protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cirbp

Cold inducible RNA binding protein b. (170 aa)

Predicted Functional Partners:

hnrnpk

0.910

LOC101076991

0.910

LOC101079137

0.835

hnrnpc

0.824

rbmx

0.789

snrpb2

0.768

snrpa

0.768

LOC101078280

0.766

LOC101062657

0.765

prpf8

0.750

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101062657	LOC101076991	ENSTRUP00000087992	ENSTRUP00000080335	ELAV-like protein; Belongs to the RRM elav family.	Heterogeneous nuclear ribonucleoprotein K, like.	0.860
LOC101062657	cirbp	ENSTRUP00000087992	ENSTRUP00000025659	ELAV-like protein; Belongs to the RRM elav family.	Cold inducible RNA binding protein b.	0.765
LOC101062657	hnrnpc	ENSTRUP00000087992	ENSTRUP00000062192	ELAV-like protein; Belongs to the RRM elav family.	RRM domain-containing protein.	0.890
LOC101062657	hnrnpk	ENSTRUP00000087992	ENSTRUP00000063053	ELAV-like protein; Belongs to the RRM elav family.	Heterogeneous nuclear ribonucleoprotein K.	0.860
LOC101062657	rbmx	ENSTRUP00000087992	ENSTRUP00000014659	ELAV-like protein; Belongs to the RRM elav family.	RNA binding motif protein X-linked.	0.526
LOC101076991	LOC101062657	ENSTRUP00000080335	ENSTRUP00000087992	Heterogeneous nuclear ribonucleoprotein K, like.	ELAV-like protein; Belongs to the RRM elav family.	0.860
LOC101076991	LOC101078280	ENSTRUP00000080335	ENSTRUP00000017981	Heterogeneous nuclear ribonucleoprotein K, like.	ELAV-like protein; Belongs to the RRM elav family.	0.860
LOC101076991	LOC101079137	ENSTRUP00000080335	ENSTRUP00000032196	Heterogeneous nuclear ribonucleoprotein K, like.	Serine/arginine-rich splicing factor 9-like.	0.714
LOC101076991	cirbp	ENSTRUP00000080335	ENSTRUP00000025659	Heterogeneous nuclear ribonucleoprotein K, like.	Cold inducible RNA binding protein b.	0.910
LOC101076991	hnrnpc	ENSTRUP00000080335	ENSTRUP00000062192	Heterogeneous nuclear ribonucleoprotein K, like.	RRM domain-containing protein.	0.995
LOC101076991	prpf8	ENSTRUP00000080335	ENSTRUP00000040670	Heterogeneous nuclear ribonucleoprotein K, like.	Pre-mRNA processing factor 8.	0.400
LOC101076991	rbmx	ENSTRUP00000080335	ENSTRUP00000014659	Heterogeneous nuclear ribonucleoprotein K, like.	RNA binding motif protein X-linked.	0.988
LOC101076991	snrpa	ENSTRUP00000080335	ENSTRUP00000024381	Heterogeneous nuclear ribonucleoprotein K, like.	Small nuclear ribonucleoprotein polypeptide A.	0.667
LOC101076991	snrpb2	ENSTRUP00000080335	ENSTRUP00000022769	Heterogeneous nuclear ribonucleoprotein K, like.	Small nuclear ribonucleoprotein polypeptide B2.	0.667
LOC101078280	LOC101076991	ENSTRUP00000017981	ENSTRUP00000080335	ELAV-like protein; Belongs to the RRM elav family.	Heterogeneous nuclear ribonucleoprotein K, like.	0.860
LOC101078280	cirbp	ENSTRUP00000017981	ENSTRUP00000025659	ELAV-like protein; Belongs to the RRM elav family.	Cold inducible RNA binding protein b.	0.766
LOC101078280	hnrnpc	ENSTRUP00000017981	ENSTRUP00000062192	ELAV-like protein; Belongs to the RRM elav family.	RRM domain-containing protein.	0.890
LOC101078280	hnrnpk	ENSTRUP00000017981	ENSTRUP00000063053	ELAV-like protein; Belongs to the RRM elav family.	Heterogeneous nuclear ribonucleoprotein K.	0.860
LOC101078280	rbmx	ENSTRUP00000017981	ENSTRUP00000014659	ELAV-like protein; Belongs to the RRM elav family.	RNA binding motif protein X-linked.	0.526
LOC101079137	LOC101076991	ENSTRUP00000032196	ENSTRUP00000080335	Serine/arginine-rich splicing factor 9-like.	Heterogeneous nuclear ribonucleoprotein K, like.	0.714