Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lhx4LIM homeobox 4. (389 aa)    
Predicted Functional Partners:
LOC101079976
ISL LIM homeobox 2b.
   
 0.805
isl1
ISL LIM homeobox 1.
   
 0.805
isl2
ISL LIM homeobox 2a.
   
 0.805
ALX3
Uncharacterized protein.
   
 0.710
ldb2
LIM domain binding 2a.
    
 0.709
LOC101073193
LIM domain binding 1a.
    
 0.709
LOC101073193-2
LIM domain-binding protein 1.
    
 0.709
ldb1
LIM domain binding 1a.
    
 0.709
pou1f1
POU domain protein.
   
 
 0.696
ssbp2
Si:ch211-130m23.3.
    
 
 0.638
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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