LOC101062688 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101062688

DEK_C domain-containing protein. (415 aa)

Predicted Functional Partners:

baz1b

0.966

LOC101064659

0.883

UPF1

0.883

tbl2

0.876

sf3b1

0.868

daxx

0.835

smarca5

0.829

ddx21

0.809

spopl

0.808

SPOP

0.808

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101062688	LOC101064659	ENSTRUP00000025673	ENSTRUP00000000308	DEK_C domain-containing protein.	Uncharacterized protein.	0.883
LOC101062688	SPOP	ENSTRUP00000025673	ENSTRUP00000075159	DEK_C domain-containing protein.	Speckle type BTB/POZ protein.	0.808
LOC101062688	UPF1	ENSTRUP00000025673	ENSTRUP00000012294	DEK_C domain-containing protein.	Putative regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an rent1-rent2-rent3 surveillance complex is believed to activate NMD (By similarity).	0.883
LOC101062688	baz1b	ENSTRUP00000025673	ENSTRUP00000014175	DEK_C domain-containing protein.	Bromodomain adjacent to zinc finger domain, 1B.	0.966
LOC101062688	daxx	ENSTRUP00000025673	ENSTRUP00000054831	DEK_C domain-containing protein.	Death-domain associated protein.	0.835
LOC101062688	ddx21	ENSTRUP00000025673	ENSTRUP00000079783	DEK_C domain-containing protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 21.	0.809
LOC101062688	sf3b1	ENSTRUP00000025673	ENSTRUP00000039721	DEK_C domain-containing protein.	Splicing factor 3b, subunit 1.	0.868
LOC101062688	smarca5	ENSTRUP00000025673	ENSTRUP00000036063	DEK_C domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.829
LOC101062688	spopl	ENSTRUP00000025673	ENSTRUP00000020686	DEK_C domain-containing protein.	Speckle type BTB/POZ protein like b.	0.808
LOC101062688	tbl2	ENSTRUP00000025673	ENSTRUP00000020973	DEK_C domain-containing protein.	MYB binding protein (P160) 1a.	0.876
LOC101064659	LOC101062688	ENSTRUP00000000308	ENSTRUP00000025673	Uncharacterized protein.	DEK_C domain-containing protein.	0.883
LOC101064659	UPF1	ENSTRUP00000000308	ENSTRUP00000012294	Uncharacterized protein.	Putative regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an rent1-rent2-rent3 surveillance complex is believed to activate NMD (By similarity).	0.900
LOC101064659	ddx21	ENSTRUP00000000308	ENSTRUP00000079783	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 21.	0.478
LOC101064659	sf3b1	ENSTRUP00000000308	ENSTRUP00000039721	Uncharacterized protein.	Splicing factor 3b, subunit 1.	0.492
SPOP	LOC101062688	ENSTRUP00000075159	ENSTRUP00000025673	Speckle type BTB/POZ protein.	DEK_C domain-containing protein.	0.808
SPOP	daxx	ENSTRUP00000075159	ENSTRUP00000054831	Speckle type BTB/POZ protein.	Death-domain associated protein.	0.819
SPOP	spopl	ENSTRUP00000075159	ENSTRUP00000020686	Speckle type BTB/POZ protein.	Speckle type BTB/POZ protein like b.	0.901
UPF1	LOC101062688	ENSTRUP00000012294	ENSTRUP00000025673	Putative regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an rent1-rent2-rent3 surveillance complex is believed to activate NMD (By similarity).	DEK_C domain-containing protein.	0.883
UPF1	LOC101064659	ENSTRUP00000012294	ENSTRUP00000000308	Putative regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an rent1-rent2-rent3 surveillance complex is believed to activate NMD (By similarity).	Uncharacterized protein.	0.900
UPF1	ddx21	ENSTRUP00000012294	ENSTRUP00000079783	Putative regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an rent1-rent2-rent3 surveillance complex is believed to activate NMD (By similarity).	DEAD (Asp-Glu-Ala-Asp) box helicase 21.	0.478