scpp3c protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scpp3c

Uncharacterized protein. (135 aa)

Predicted Functional Partners:

scpp4

0.701

scpp3b

0.701

scpp2

0.590

scpp5

0.585

scpp1

0.580

mgp

0.546

edar

0.450

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
edar	mgp	ENSTRUP00000087249	ENSTRUP00000019921	Ectodysplasin A receptor.	Gla domain-containing protein.	0.464
edar	scpp1	ENSTRUP00000087249	ENSTRUP00000024725	Ectodysplasin A receptor.	SCPP1.	0.450
edar	scpp2	ENSTRUP00000087249	ENSTRUP00000025588	Ectodysplasin A receptor.	Uncharacterized protein.	0.440
edar	scpp3b	ENSTRUP00000087249	ENSTRUP00000082742	Ectodysplasin A receptor.	SCPP3B.	0.430
edar	scpp3c	ENSTRUP00000087249	ENSTRUP00000025680	Ectodysplasin A receptor.	Uncharacterized protein.	0.450
edar	scpp5	ENSTRUP00000087249	ENSTRUP00000025804	Ectodysplasin A receptor.	SCPP5.	0.452
mgp	edar	ENSTRUP00000019921	ENSTRUP00000087249	Gla domain-containing protein.	Ectodysplasin A receptor.	0.464
mgp	scpp1	ENSTRUP00000019921	ENSTRUP00000024725	Gla domain-containing protein.	SCPP1.	0.438
mgp	scpp2	ENSTRUP00000019921	ENSTRUP00000025588	Gla domain-containing protein.	Uncharacterized protein.	0.541
mgp	scpp3b	ENSTRUP00000019921	ENSTRUP00000082742	Gla domain-containing protein.	SCPP3B.	0.455
mgp	scpp3c	ENSTRUP00000019921	ENSTRUP00000025680	Gla domain-containing protein.	Uncharacterized protein.	0.546
mgp	scpp4	ENSTRUP00000019921	ENSTRUP00000025730	Gla domain-containing protein.	Uncharacterized protein.	0.450
mgp	scpp5	ENSTRUP00000019921	ENSTRUP00000025804	Gla domain-containing protein.	SCPP5.	0.450
scpp1	edar	ENSTRUP00000024725	ENSTRUP00000087249	SCPP1.	Ectodysplasin A receptor.	0.450
scpp1	mgp	ENSTRUP00000024725	ENSTRUP00000019921	SCPP1.	Gla domain-containing protein.	0.438
scpp1	scpp2	ENSTRUP00000024725	ENSTRUP00000025588	SCPP1.	Uncharacterized protein.	0.896
scpp1	scpp3b	ENSTRUP00000024725	ENSTRUP00000082742	SCPP1.	SCPP3B.	0.590
scpp1	scpp3c	ENSTRUP00000024725	ENSTRUP00000025680	SCPP1.	Uncharacterized protein.	0.580
scpp1	scpp4	ENSTRUP00000024725	ENSTRUP00000025730	SCPP1.	Uncharacterized protein.	0.588
scpp1	scpp5	ENSTRUP00000024725	ENSTRUP00000025804	SCPP1.	SCPP5.	0.966