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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sympkSymplekin. (1212 aa)    
Predicted Functional Partners:
fip1l1
FIP1 like 1b (S. cerevisiae).
   
 0.998
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.998
LOC101075419
Cleavage and polyadenylation specific factor 3.
   
 0.998
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.998
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.998
PAPOLG
Poly(A) polymerase gamma.
   
 0.998
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
    
 0.995
pcf11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.990
cstf2
RRM domain-containing protein.
   
 0.987
wdr77
WD_REPEATS_REGION domain-containing protein.
    
 0.971
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.