STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smad7Mothers against decapentaplegic homolog. (373 aa)    
Predicted Functional Partners:
SMURF2
E3 ubiquitin-protein ligase.
    
 0.991
LOC101071114
E3 ubiquitin-protein ligase.
    
 0.991
SMURF1
SMAD specific E3 ubiquitin protein ligase 1.
    
 0.983
LOC101064562
Mothers against decapentaplegic homolog.
   
0.950
smad9
Mothers against decapentaplegic homolog.
   
0.945
smad1
Mothers against decapentaplegic homolog.
   
0.945
LOC101072871
Mothers against decapentaplegic homolog.
   
0.937
smad6
Mothers against decapentaplegic homolog.
  
  
0.908
LOC101078620
Mothers against decapentaplegic homolog.
     
0.905
bmpr1b
Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
   
 0.717
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.