Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
exd3Exonuclease 3'-5' domain containing 3. (920 aa)    
Predicted Functional Partners:
zfyve28
Zinc finger, FYVE domain containing 28.
      
 0.810
LOC105419995
DBF4-type domain-containing protein.
    
 
 0.713
parpbp
PARP1 binding protein.
    
 
 0.709
exd1
Uncharacterized protein.
      
 0.698
cmc4
Uncharacterized protein.
    
 0.638
aff3
AF4/FMR2 family member 3 isoform X1.
   
 0.633
dnajc17
DnaJ (Hsp40) homolog, subfamily C, member 17.
      
 0.625
LOC101073126
Ig-like domain-containing protein.
    
 0.616
ENSTRUP00000049164
Adhesion molecule with Ig-like domain 3.
    
 0.616
mrps21
Mitochondrial ribosomal protein S21.
    
 0.538
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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