Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nom1Nucleolar protein with MIF4G domain 1. (825 aa)    
Predicted Functional Partners:
wdr3
WD repeat domain 3.
   
 
 0.975
ddx10
RNA helicase.
   
 
 0.970
ngdn
Neuroguidin, EIF4E binding protein.
   
 
 0.958
bysl
Bystin-like.
   
 
 0.947
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 
 0.946
nat10
N-acetyltransferase 10.
   
 
 0.946
utp6
UTP6 small subunit processome component.
   
 
 0.944
bms1
BMS1 ribosome biogenesis factor.
   
 
 0.931
noc4l
Nucleolar complex associated 4 homolog.
   
   0.930
utp3
UTP3 small subunit processome component.
   
 
 0.928
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.