STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc124Coiled-coil domain containing 124. (222 aa)    
Predicted Functional Partners:
eif3j
Eukaryotic translation initiation factor 3, subunit Jb.
    
 
 0.904
LOC101075259
SERPINE1 mRNA binding protein 1a.
   
 
 0.786
abce1
ATP-binding cassette, sub-family E (OABP), member 1.
    
 
 0.779
rps19
Ribosomal protein S19.
   
 
 0.761
serbp1
SERPINE1 mRNA binding protein 1b.
   
 
 0.740
aurkaip1
Aurora kinase A interacting protein 1.
   
  
 0.724
c21h5orf34
DUF4524 domain-containing protein.
      
 0.699
clpp
ATP-dependent Clp protease proteolytic subunit.
   
    0.694
rpl8
Ribosomal protein L8.
   
 
 0.689
rpl35
Ribosomal protein L35.
   
 
 0.681
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.