STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnf141Ring finger protein 141. (226 aa)    
Predicted Functional Partners:
LOC101071319
Stomatin.
      
 0.778
cenpm
Proliferation associated nuclear element.
   
  
 0.723
samd11
Sterile alpha motif domain containing 11.
      
 0.654
trip12
Thyroid hormone receptor interactor 12.
     
 0.603
rnf14
RBR-type E3 ubiquitin transferase.
     
 0.564
cfap73
Uncharacterized protein.
      
 0.559
LOC105417835
Uncharacterized protein.
    
 
 0.516
noc2l
NOC2-like nucleolar associated transcriptional repressor.
      
 0.516
znf598
Zinc finger protein 598.
      
 0.509
kat8
Ring finger protein 25.
      
 0.509
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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