STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdr16c5Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (307 aa)    
Predicted Functional Partners:
LOC101063989
Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.940
raldh3
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
  
 0.934
aldh1a2
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
  
 0.934
lrat
Lecithin retinol acyltransferase a.
   
 
 0.921
LOC101074060
Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.919
LOC101062884
Si:ch1073-13h15.3.
    
 0.914
LOC101065125
Uncharacterized protein.
    
 0.914
LOC101076520
LRAT domain-containing protein.
   
 0.908
DGAT1
O-acyltransferase.
   
 
 0.908
LOC101072465
O-acyltransferase.
   
 
 0.908
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.