STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101071192Grainyhead-like transcription factor 3. (569 aa)    
Predicted Functional Partners:
irf6
Interferon regulatory factor 6.
    
 
 0.829
znf750
Zinc finger protein 750.
   
  
 0.630
irf5
IRF tryptophan pentad repeat domain-containing protein.
    
 
 0.598
kdf1
Keratinocyte differentiation factor 1a.
   
  
 0.597
rnf2
Ring finger protein 2.
    
 
 0.591
trpt1
tRNA phosphotransferase 1.
      
 0.573
qrsl1
Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the amidase family. GatA subfamily.
      
 0.571
cnksr1
Connector enhancer of kinase suppressor of Ras 1.
      
 0.563
mrpl18
Mitochondrial ribosomal protein L18.
      
 0.562
tbx22
T-box transcription factor 22.
      
 0.546
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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