mpv17l protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mpv17l

Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (201 aa)

Predicted Functional Partners:

pex19

0.682

eci2

0.571

pex3

0.542

pex16

0.537

pex10

0.527

rrn3

0.525

AFMID

0.520

LOC101064976

0.512

pxmp4

0.511

pex12

0.503

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFMID	mpv17l	ENSTRUP00000048940	ENSTRUP00000025935	Kynurenine formamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation. Kynurenine may be further oxidized to nicotinic acid, NAD(H) and NADP(H). Required for elimination of toxic metabolites.	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.520
LOC101064976	mpv17l	ENSTRUP00000080977	ENSTRUP00000025935	Phospholipase A(2).	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.512
eci2	mpv17l	ENSTRUP00000044766	ENSTRUP00000025935	Enoyl-CoA delta isomerase 2.	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.571
eci2	pex10	ENSTRUP00000044766	ENSTRUP00000076586	Enoyl-CoA delta isomerase 2.	Peroxisomal biogenesis factor 10.	0.771
eci2	pex12	ENSTRUP00000044766	ENSTRUP00000065619	Enoyl-CoA delta isomerase 2.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.851
eci2	pex16	ENSTRUP00000044766	ENSTRUP00000021309	Enoyl-CoA delta isomerase 2.	Peroxisomal membrane protein PEX16.	0.421
eci2	pex19	ENSTRUP00000044766	ENSTRUP00000074002	Enoyl-CoA delta isomerase 2.	Peroxisomal biogenesis factor 19.	0.548
eci2	pex3	ENSTRUP00000044766	ENSTRUP00000040763	Enoyl-CoA delta isomerase 2.	Peroxisomal biogenesis factor 3.	0.682
eci2	pxmp4	ENSTRUP00000044766	ENSTRUP00000047247	Enoyl-CoA delta isomerase 2.	Peroxisomal membrane protein 4; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.485
mpv17l	AFMID	ENSTRUP00000025935	ENSTRUP00000048940	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Kynurenine formamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation. Kynurenine may be further oxidized to nicotinic acid, NAD(H) and NADP(H). Required for elimination of toxic metabolites.	0.520
mpv17l	LOC101064976	ENSTRUP00000025935	ENSTRUP00000080977	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Phospholipase A(2).	0.512
mpv17l	eci2	ENSTRUP00000025935	ENSTRUP00000044766	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Enoyl-CoA delta isomerase 2.	0.571
mpv17l	pex10	ENSTRUP00000025935	ENSTRUP00000076586	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Peroxisomal biogenesis factor 10.	0.527
mpv17l	pex12	ENSTRUP00000025935	ENSTRUP00000065619	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.503
mpv17l	pex16	ENSTRUP00000025935	ENSTRUP00000021309	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Peroxisomal membrane protein PEX16.	0.537
mpv17l	pex19	ENSTRUP00000025935	ENSTRUP00000074002	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Peroxisomal biogenesis factor 19.	0.682
mpv17l	pex3	ENSTRUP00000025935	ENSTRUP00000040763	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Peroxisomal biogenesis factor 3.	0.542
mpv17l	pxmp4	ENSTRUP00000025935	ENSTRUP00000047247	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	Peroxisomal membrane protein 4; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.511
mpv17l	rrn3	ENSTRUP00000025935	ENSTRUP00000058901	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	RRN3 homolog, RNA polymerase I transcription factor.	0.525
pex10	eci2	ENSTRUP00000076586	ENSTRUP00000044766	Peroxisomal biogenesis factor 10.	Enoyl-CoA delta isomerase 2.	0.771