STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101062096ATP-binding cassette, sub-family F (GCN20), member 2b. (614 aa)    
Predicted Functional Partners:
abce1
ATP-binding cassette, sub-family E (OABP), member 1.
   
 
 0.980
mrpl4
Mitochondrial ribosomal protein L4.
   
 
 0.870
eif5b
Eukaryotic translation initiation factor 5B.
  
 
 0.828
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.814
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.796
mrpl33
Mitochondrial ribosomal protein L33.
   
 
 0.782
rpl35
Ribosomal protein L35.
   
 
 0.782
rpl9
Ribosomal protein L9.
  
 
 0.779
rps18
Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.778
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.778
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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