STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101062096ATP-binding cassette, sub-family F (GCN20), member 2b. (614 aa)    
Predicted Functional Partners:
abce1
ATP-binding cassette, sub-family E (OABP), member 1.
   
 
 0.986
eif5b
Eukaryotic translation initiation factor 5B.
  
 
 0.901
mrpl4
Mitochondrial ribosomal protein L4.
   
 
 0.828
abcg5
ATP-binding cassette, sub-family G (WHITE), member 5.
    
 
 0.800
abca12
ATP-binding cassette, sub-family A (ABC1), member 12.
    
 
 0.796
polr1a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.783
ipo4
Importin 4.
   
    0.782
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.764
zc3h15
Zinc finger CCCH-type containing 15.
 
 
   0.759
gnl1
Guanine nucleotide binding protein-like 1.
   
 
 0.754
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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