STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scube3Signal peptide, CUB domain, EGF-like 3. (1015 aa)    
Predicted Functional Partners:
GCC2
GRIP domain-containing protein.
    
 0.669
mmp9
Uncharacterized protein.
   
 0.614
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.498
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.498
ENSTRUP00000064256
annotation not available
    
 0.498
Arid4b
Uncharacterized protein.
    
 0.498
rbpjl
Recombining binding protein suppressor of hairless-like protein isoform X1.
    
 0.462
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.462
mmpf1
Matrix metalloproteinase.
   
 0.450
H2SI73_TAKRU
ZnMc domain-containing protein.
   
 0.450
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.