Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam136aFamily with sequence similarity 136 member A. (138 aa)    
Predicted Functional Partners:
aspscr1
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
   0.819
slc35e4
Solute carrier family 35 member E4.
      
 0.772
gmcl1
Germ cell-less, spermatogenesis associated.
      
 0.735
snx24
Sorting nexin 24.
      
 0.725
LOC101078562
Divergent protein kinase domain 1Ab.
      
 0.722
pcyox1l
Prenylcysteine oxidase 1 like.
      
 0.699
pcyox1
Prenylcysteine oxidase 1.
      
 0.699
LOC101067335
Family with sequence similarity 8 member A1a.
      
 0.631
LOC101075371
Family with sequence similarity 8 member A1b.
      
 0.631
itfg1
Integrin alpha FG-GAP repeat containing 1.
      
 0.624
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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