Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MARF1Meiosis regulator and mRNA stability factor 1. (1769 aa)    
Predicted Functional Partners:
dcp1a
Decapping mRNA 1A.
    
 
 0.949
Dcp2
DCP2 domain-containing protein.
    
 
 0.836
LOC101066426
Tudor domain containing 7 b.
      
 0.724
fopnl
Fgfr1op N-terminal like.
      
 0.705
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
    
 0.688
vps45
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.653
ccnb3
Cyclin B3; Belongs to the cyclin family.
   
 
 0.646
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.620
Fancm
ERCC4 domain-containing protein.
    
 0.615
rtf1
RTF1 homolog, Paf1/RNA polymerase II complex component.
      
 0.615
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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