STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
optnOptineurin. (540 aa)    
Predicted Functional Partners:
LOC101074386
Sequestosome 1.
    
 0.985
LOC101065324
Microtubule-associated protein 1 light chain 3 beta.
   
 0.977
calcoco2
SKICH domain-containing protein.
    
 0.975
tax1bp1
Tax1 (human T-cell leukemia virus type I) binding protein 1b.
   
 0.965
LOC101077097
NBR1 autophagy cargo receptor b.
    
 0.957
LOC101072529
PB1 domain-containing protein.
    
 0.957
GABARAPL2
GABA(A) receptor-associated protein like 2.
   
 0.955
tnip1
TNFAIP3 interacting protein 1.
   
 
 0.953
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
   
 0.953
htt
Huntingtin; May play a role in microtubule-mediated transport or vesicle function.
    
 
 0.947
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.