Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101077317Uncharacterized protein. (930 aa)    
Predicted Functional Partners:
LOC101069428
Leucine rich repeat and fibronectin type III domain containing 5a.
   
 0.555
LOC101068436
Transthyretin; Thyroid hormone-binding protein. Probably transports thyroxine from the bloodstream to the brain.
     
 0.491
ino80d
INO80 complex subunit Da.
      
 0.489
TMEM19
Transmembrane protein 19.
      
 0.484
TMEM216
Transmembrane protein 216.
      
 0.483
LOC101061514
Leucine rich repeat and fibronectin type III domain containing 5b.
   
 0.466
slc30a5
Solute carrier family 30 member 5.
   
 
 0.458
scarf1
Scavenger receptor class F, member 1.
    
 
 0.456
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
      
 0.456
PRAG1
PEAK1 related, kinase-activating pseudokinase 1.
      
 0.424
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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