Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
slc16a5Solute carrier family 16 member 5a. (535 aa)    
Predicted Functional Partners:
LOC101079649
LHFPL tetraspan subfamily member 4b.
      
 0.631
LOC101070556
Solute carrier family 37 member 1.
      
 0.609
sfxn2
Sidoreflexin.
    
 
 0.585
emb
Embigin.
    
 0.566
LOC101063900
Sodium channel and clathrin linker 1.
      
 0.518
slc15a4
Solute carrier family 15 member 4.
   
 
 0.438
slc25a25
Solute carrier family 25 member 25b; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.428
Kmt2d
Lysine (K)-specific methyltransferase 2D.
      
 0.428
cacna1b
Voltage-dependent N-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1B gives rise to N-type calcium currents.
   
  
 0.427
rps10
Ribosomal protein S10.
      
 0.427
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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