STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101078128Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (721 aa)    
Predicted Functional Partners:
LOC101062685
Notch receptor 1a.
    
0.893
LOC101067059
Notch receptor 1b.
    
0.893
LOC101078599
Notch receptor 3.
    
0.851
LOC101080224
Notch receptor 2.
    
0.851
mib1
Mindbomb E3 ubiquitin protein ligase 1.
   
 0.718
hic1
Hypermethylated in cancer 1.
    
 0.716
LOC101068611
WW domain containing E3 ubiquitin protein ligase 1.
    
 0.667
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.602
H2UTY6_TAKRU
Uncharacterized protein.
    
 0.592
LOC101071373
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 0.538
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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