Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phf20PHD finger protein 20, a. (1031 aa)    
Predicted Functional Partners:
LOC101069329
KAT8 regulatory NSL complex subunit 3.
    
 0.987
LOC101068512
KAT8 regulatory NSL complex subunit 1a.
    
 0.940
kansl1l
PEHE domain-containing protein.
    
 0.940
wdr5
WD repeat domain 5.
    
 0.885
kat5
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 0.885
OGT
O-linked N-acetylglucosamine (GlcNAc) transferase.
   
 0.882
suds3
SDS3 homolog, SIN3A corepressor complex component.
    
 
 0.828
hcfc2
Host cell factor C2.
    
 0.824
LOC101079994
Host cell factor C1a.
    
 0.824
Tex30
Testis expressed 30.
    
 0.812
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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