chl1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

chl1

Cell adhesion molecule L1-like b. (1223 aa)

Predicted Functional Partners:

cntn2

0.711

nrp1

0.696

ANK2

0.632

LOC101067381

0.632

ank1

0.632

ENSTRUP00000083487

0.632

ENSTRUP00000017762

0.589

LOC101065926

0.560

cntn1

0.560

LOC101079578

0.560

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANK2	LOC101065926	ENSTRUP00000020711	ENSTRUP00000027817	Ankyrin 2b, neuronal.	Uncharacterized protein.	0.437
ANK2	LOC101079578	ENSTRUP00000020711	ENSTRUP00000063490	Ankyrin 2b, neuronal.	Contactin 3a, tandem duplicate 1.	0.437
ANK2	chl1	ENSTRUP00000020711	ENSTRUP00000026350	Ankyrin 2b, neuronal.	Cell adhesion molecule L1-like b.	0.632
ANK2	cntn1	ENSTRUP00000020711	ENSTRUP00000042963	Ankyrin 2b, neuronal.	Contactin 1b.	0.437
ANK2	cntn2	ENSTRUP00000020711	ENSTRUP00000086244	Ankyrin 2b, neuronal.	Contactin 2.	0.437
ENSTRUP00000017762	LOC101065926	ENSTRUP00000017762	ENSTRUP00000027817	Ankyrin repeat and death domain containing 1B.	Uncharacterized protein.	0.437
ENSTRUP00000017762	LOC101079578	ENSTRUP00000017762	ENSTRUP00000063490	Ankyrin repeat and death domain containing 1B.	Contactin 3a, tandem duplicate 1.	0.437
ENSTRUP00000017762	chl1	ENSTRUP00000017762	ENSTRUP00000026350	Ankyrin repeat and death domain containing 1B.	Cell adhesion molecule L1-like b.	0.589
ENSTRUP00000017762	cntn1	ENSTRUP00000017762	ENSTRUP00000042963	Ankyrin repeat and death domain containing 1B.	Contactin 1b.	0.437
ENSTRUP00000017762	cntn2	ENSTRUP00000017762	ENSTRUP00000086244	Ankyrin repeat and death domain containing 1B.	Contactin 2.	0.437
ENSTRUP00000083487	LOC101065926	ENSTRUP00000083487	ENSTRUP00000027817	Uncharacterized protein.	Uncharacterized protein.	0.437
ENSTRUP00000083487	LOC101067381	ENSTRUP00000083487	ENSTRUP00000022905	Uncharacterized protein.	Ankyrin 3a.	0.901
ENSTRUP00000083487	LOC101079578	ENSTRUP00000083487	ENSTRUP00000063490	Uncharacterized protein.	Contactin 3a, tandem duplicate 1.	0.437
ENSTRUP00000083487	chl1	ENSTRUP00000083487	ENSTRUP00000026350	Uncharacterized protein.	Cell adhesion molecule L1-like b.	0.632
ENSTRUP00000083487	cntn1	ENSTRUP00000083487	ENSTRUP00000042963	Uncharacterized protein.	Contactin 1b.	0.437
ENSTRUP00000083487	cntn2	ENSTRUP00000083487	ENSTRUP00000086244	Uncharacterized protein.	Contactin 2.	0.437
LOC101065926	ANK2	ENSTRUP00000027817	ENSTRUP00000020711	Uncharacterized protein.	Ankyrin 2b, neuronal.	0.437
LOC101065926	ENSTRUP00000017762	ENSTRUP00000027817	ENSTRUP00000017762	Uncharacterized protein.	Ankyrin repeat and death domain containing 1B.	0.437
LOC101065926	ENSTRUP00000083487	ENSTRUP00000027817	ENSTRUP00000083487	Uncharacterized protein.	Uncharacterized protein.	0.437
LOC101065926	LOC101067381	ENSTRUP00000027817	ENSTRUP00000022905	Uncharacterized protein.	Ankyrin 3a.	0.437