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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rcl1RNA terminal phosphate cyclase-like 1. (379 aa)    
Predicted Functional Partners:
bms1
BMS1 ribosome biogenesis factor.
   
 0.999
wdr43
WD repeat domain 43.
   
 0.994
eed
PWP2 small subunit processome component.
   
 
 0.992
imp4
IMP U3 small nucleolar ribonucleoprotein 4.
   
 
 0.991
utp18
UTP18 small subunit processome component.
   
 0.991
bysl
Bystin-like.
   
 
 0.990
noc4l
Nucleolar complex associated 4 homolog.
   
 
 0.987
wdr3
WD repeat domain 3.
   
 
 0.985
utp6
UTP6 small subunit processome component.
   
 
 0.984
tbl3
Transducin (beta)-like 3.
   
 
 0.984
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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