STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgbd5PiggyBac transposable element derived 5. (536 aa)    
Predicted Functional Partners:
cd3e
Ig_4 domain-containing protein.
   
 0.821
cd247
Uncharacterized protein.
   
 0.681
naif1
Nuclear apoptosis inducing factor 1.
   
  
 0.661
LOC101071772
THAP-type domain-containing protein.
    
 
 0.637
zmym2
Zinc finger, MYM-type 2.
    
 
 0.594
samd11
Sterile alpha motif domain containing 11.
    
 
 0.586
LOC101063240
SET domain and mariner transposase fusion gene.
    
 
 0.579
rbm33
RNA binding motif protein 33a.
   
 
 0.576
ENSTRUP00000064448
annotation not available
   
  
 0.569
hira
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
    
 0.539
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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