STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pgbd5PiggyBac transposable element derived 5. (536 aa)    
Predicted Functional Partners:
cd3e
Ig_4 domain-containing protein.
   
 0.776
LOC101063240
SET domain and mariner transposase fusion gene.
    
 
 0.733
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
   0.726
LOC101067435
Transmembrane protein 145.
   
  
 0.716
samd11
Sterile alpha motif domain containing 11.
    
 
 0.711
ENSTRUP00000064448
annotation not available
      
 0.704
rbm33
RNA binding motif protein 33a.
    
 
 0.702
naif1
Nuclear apoptosis inducing factor 1.
   
  
 0.673
zmym2
Zinc finger, MYM-type 2.
    
 
 0.625
RAG2
Recombination-activating protein 2.
      
 0.620
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.