STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101067283Coiled-coil and C2 domain containing 1B. (848 aa)    
Predicted Functional Partners:
LOC101075600
Charged multivesicular body protein 4C.
    
 0.768
chmp4b
Charged multivesicular body protein 4Bb.
    
 0.768
LOC101072878
Uncharacterized protein.
    
 0.768
tm9sf1
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
    
 0.749
reep1
Receptor accessory protein 1.
     
 0.720
chmp2a
Charged multivesicular body protein 2A.
     
 0.713
ist1
IST1 factor associated with ESCRT-III.
     
 0.700
chmp7
Charged multivesicular body protein 7.
     
 0.689
LOC101067383
Charged multivesicular body protein 6a.
     
 0.625
chmp6
Charged multivesicular body protein 6.
     
 0.625
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.