STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101067283Coiled-coil and C2 domain containing 1B. (848 aa)    
Predicted Functional Partners:
LOC101075600
Charged multivesicular body protein 4C.
    
 0.851
chmp4b
Charged multivesicular body protein 4Bb.
    
 0.851
LOC101072878
Uncharacterized protein.
    
 0.851
tm9sf1
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
    
 0.765
chmp7
Charged multivesicular body protein 7.
     
 0.735
chmp2a
Charged multivesicular body protein 2A.
     
 0.711
reep1
Receptor accessory protein 1.
     
 0.710
ist1
IST1 factor associated with ESCRT-III.
     
 0.709
phgdh
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
      
 0.695
LOC101067383
Charged multivesicular body protein 6a.
     
 0.665
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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