Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cln5CLN5 intracellular trafficking protein. (339 aa)    
Predicted Functional Partners:
cln3
Battenin.
    
 
 0.904
cln8
CLN8 transmembrane ER and ERGIC protein.
      
 0.890
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
      
 0.886
mfsd8
Major facilitator superfamily domain containing 8.
      
 0.810
cln6
CLN6 transmembrane ER protein a.
  
 
 
 0.803
tpp1
Tripeptidyl peptidase I.
      
 0.785
ENSTRUP00000058995
annotation not available
    
 
 0.733
clcn7
Chloride channel protein.
      
 0.698
LOC101075977
Cathepsin F; Belongs to the peptidase C1 family.
      
 0.695
arsg
Arylsulfatase G.
   
 
 0.659
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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