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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cln5CLN5 intracellular trafficking protein. (339 aa)    
Predicted Functional Partners:
cln3
Battenin.
    
 
 0.676
cln6
CLN6 transmembrane ER protein a.
  
   
 0.660
cln8
CLN8 transmembrane ER and ERGIC protein.
      
 0.650
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
      
 0.649
mfsd8
Major facilitator superfamily domain containing 8.
      
 0.593
tpp1
Tripeptidyl peptidase I.
      
 0.566
ENSTRUP00000058995
annotation not available
      
 0.539
arsg
Arylsulfatase G.
   
 
 0.441
LOC101075977
Cathepsin F; Belongs to the peptidase C1 family.
      
 0.434
sgsh
N-sulfoglucosamine sulfohydrolase (sulfamidase).
   
 
 0.412
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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